species:   Artha
pid:       MI0005109
parent:    ath-MIR779
paralog:   
locus:     2:9560761-9560923
matures:   ['UUCUGCUAUGUUGCUGCUCAU', 'GAGAGUAAUAUAGUUGAAUC']
srr:       SRR9216053
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216053.cram 2:9560761-9560923

0 out of bounds
64 alignments
64 proper strand
51 stranded perfect matches

                                         ************************                                      ***********************                                     
AAUGAGAGUAAUAUAGUUGAAUCUUCGAAAGUAUUUCAAGAAGUCAGCUGAGCUUUCUCGUCAUCACUUAUUAGUAAAUAUAGUCUCUAUAUUUUUGAUGAGUGAUGAUUGGAAAUUUCGUUGACUCAUUACUCUUGAUGAUUCUGCUAUGUUGCUGCUCAUU
(((((((((((((((((.(((((.((((.((((.....(..(((((((.(((.(((((.(((((((((((((((.((((((((...))))))))))))))))))))))).))))).))))))))))..))))).)))).))))).))))))))))).))))))
---------------------------------------------------------------------------------------------------------------------------------------------UUCUGCUAUGUUGCUGCUCAU- l=21 a=0 c
---GAGAGUAAUAUAGUUGAAUC-------------------------------------------------------------------------------------------------------------------------------------------- l=20 a=0 c*
---------------------------------------------------------------------------------------------------------UGAUUGGAAAUUUCGUUGACU------------------------------------- l=21 a=14 ma
-------------------------------------------UCAGCUGAGCUUUCUCGUCAUC-------------------------------------------------------------------------------------------------- l=22 a=9 ma*

--UGAGAGUAAUAUAGUUGAAUC-------------------------------------------------------------------------------------------------------------------------------------------- l=21 a=3 
-------------------------------------------UCAGCUGAGCUUUCUCGUCAUC-------------------------------------------------------------------------------------------------- l=22 a=9 (ma*)
-------------------------------------------UCAGCUGAGCUUUCUCGUCAUu-------------------------------------------------------------------------------------------------- l=22 a=5 
--------------------------------------------------------------------------------------------------------AUGAUUGGAAAUUUCGUUGA--------------------------------------- l=20 a=1 
---------------------------------------------------------------------------------------------------------UGAUUGGAAAUUUCGUUGACU------------------------------------- l=21 a=14 (ma)
---------------------------------------------------------------------------------------------------------UGAUUGGAAAUUUCGUUGACc------------------------------------- l=21 a=2 
---------------------------------------------------------------------------------------------------------UGAUUGGAAAUUUCGUUGACa------------------------------------- l=21 a=1 
---------------------------------------------------------------------------------------------------------UGAUUGGAAAUUUCGUUGACUCAUUACUCUUGAUGAUUCUGu---------------- l=42 a=2 
---------------------------------------------------------------------------------------------------------UGAUUGGAAAUUUCGUUGACUCAUUACUCUUGAUGAUUCUGC---------------- l=42 a=3 
---------------------------------------------------------------------------------------------------------UGAUUGGAAAUUUCGUUGACUCAUUACUCUUGAUGAUUCUGCU--------------- l=43 a=1 
------------------------------------------------------------------------------------------------------------------------------CAUUACUCUUGAUGAUUCUGC---------------- l=21 a=10 
------------------------------------------------------------------------------------------------------------------------------CAUUACUCUUGAUGAUUCUGu---------------- l=21 a=1 
------------------------------------------------------------------------------------------------------------------------------CAUUACUCUUGAUGAUUCUGCU--------------- l=22 a=3 
------------------------------------------------------------------------------------------------------------------------------CAUUACUCUUGAUGAUUCUGCa--------------- l=22 a=1 
------------------------------------------------------------------------------------------------------------------------------CAUUuCUCUUGAUGAUUCUGCU--------------- l=22 a=1 
----------------------------------------------------------------------------------------------------------------------------------ACUCUUGAUGAUUCUGC---------------- l=17 a=1 
---------------------------------------------------------------------------------------------------------------------------------------------UUCUGCUAUGUUGCUGCUCAUU l=22 a=6 

mb-01011
ax-1111011
ku-01
ss-111111111101
fn-111
